[HTML][HTML] Single cell T cell landscape and T cell receptor repertoire profiling of AML in context of PD-1 blockade therapy

HA Abbas, D Hao, K Tomczak, P Barrodia, JS Im… - Nature …, 2021 - nature.com
Nature communications, 2021nature.com
In contrast to the curative effect of allogenic stem cell transplantation in acute myeloid
leukemia via T cell activity, only modest responses are achieved with checkpoint-blockade
therapy, which might be explained by T cell phenotypes and T cell receptor (TCR)
repertoires. Here, we show by paired single-cell RNA analysis and TCR repertoire profiling
of bone marrow cells in relapsed/refractory acute myeloid leukemia patients pre/post
azacytidine+ nivolumab treatment that the disease-related T cell subsets are highly …
Abstract
In contrast to the curative effect of allogenic stem cell transplantation in acute myeloid leukemia via T cell activity, only modest responses are achieved with checkpoint-blockade therapy, which might be explained by T cell phenotypes and T cell receptor (TCR) repertoires. Here, we show by paired single-cell RNA analysis and TCR repertoire profiling of bone marrow cells in relapsed/refractory acute myeloid leukemia patients pre/post azacytidine+nivolumab treatment that the disease-related T cell subsets are highly heterogeneous, and their abundance changes following PD-1 blockade-based treatment. TCR repertoires expand and primarily emerge from CD8+ cells in patients responding to treatment or having a stable disease, while TCR repertoires contract in therapy-resistant patients. Trajectory analysis reveals a continuum of CD8+ T cell phenotypes, characterized by differential expression of granzyme B and a bone marrow-residing memory CD8+ T cell subset, in which a population with stem-like properties expressing granzyme K is enriched in responders. Chromosome 7/7q loss, on the other hand, is a cancer-intrinsic genomic marker of PD-1 blockade resistance in AML. In summary, our study reveals that adaptive T cell plasticity and genomic alterations determine responses to PD-1 blockade in acute myeloid leukemia.
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